It's rather easy:
Old BOINC clients (prior to version 4 I think) did not have a host-CPID. These hosts are in the projects database (D

without (= empty) CPID. Imported into BOINCstats, these still don't have a CPID (obviously).
The there are also some projects that have duplicate host-CPID's. This is an error in THEIR DB.
The CPID is the thing that matches the host across projects, and is (should be) a unique identifier. But, all hosts with an empty CPID are A] not unique and B] cannot be matched with another host because which of the thousands of hosts that also don't have a CPID is the match????
So, in the BOINC combined stats we only have the hosts that DO have a UNIQUE CPID. All hosts with either an empty CPID or a duplicate CPID are discarded.
A quick query on the SETI host DB (on BOINCstats) reveals 156923 hosts withoud CPID.
A duplicate search on the Einstein host DB (BOINCstats again) shows this (cpid, followed by number of entries, first 30 results only):
4d4326fb058403231b41505f3a05870f 442
cd4f810bf5ae7442a4230cae7caaf02a 103
b560bff5e374c5b0506a5a598bebadf1 87
c4fb8b12ccfe4e41673679bc1ee9118b 85
d556e90c85777c3eab314ccbe0f3461d 74
765087d2ce49cdeb88d10bcc17b361c3 44
f720f62f8fe66a9164bff9610b244ceb 42
a2b6c7c1c0133de5e1e63fbf285fe7bf 41
046778c24ce19c780aef83e3f01c33ee 38
64ebe5e510d0f5418b77ca129f0ae829 38
9749fdea8f8ab78080ab82edd6e5a94e 35
8094278fe9fdd57a045946ff5f21a633 34
d96598b748760c1bb679a8c271c82d4d 31
86b89313a0f46ffb270241acf8272d8e 25
0cd8bd3fccebac731840f3c9700efb5c 24
93b00935c79b5170b13538d29eb5fcef 23
8e8a1de8c0171ed7b8e320731691f91d 22
fae3ccb1af9bd7fbe52225d9c65c8f57 19
c36244fc5c9d6c2a31bf26c95385a308 17
ac74df94c5feac8857a98a85da7845de 17
23751b91bdaf3b6c3c3dbb4951de61f0 17
53f0a6b7fbc855d536e4694ee63687c6 16
ab03865d832506eea38d33f130bf1d51 16
0ab289dd445af45542f26c7fd5af0dba 15
647995ac4c0ec78aa7f804ddc94e27e2 15
8b46c42f2f68df3248df2f6e2d2fd99e 15
eae6812f93c79d804fd70090fd99693c 15
f7cea96c8bac72d17b5732c7a1acb708 15
81d179e2eae5ccc5348169fc3096bebe 14
All these hosts are lost for the combined stats.
I hope this explains it better
(i.e. SETI@home users) can exceed the grand total (Combined BOINC users)
Just saw you are talking about users, but I guess you mean the hosts as the BOINC combined stats have more users then SETI.
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